File _service:extract_file:petsc.spec of Package petsc-gnu16-mvapich2

File _service:extract_file:petsc.spec of Package petsc-gnu16-mvapich2 (Revision 6562de0927e6bae224a4155a3e0ca7f0)

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%define mpi_family mvapich2
%define compiler_family gnu16
#----------------------------------------------------------------------------bh-
# This RPM .spec file is part of the OpenHPC project.
#
# It may have been modified from the default version supplied by the underlying
# release package (if available) in order to apply patches, perform customized
# build/install configurations, and supply additional files to support
# desired integration conventions.
#
#----------------------------------------------------------------------------eh-

# PETSc library that is is dependent on compiler toolchain and MPI
%define ohpc_compiler_dependent 1
%define ohpc_mpi_dependent 1
%include %{_sourcedir}/OHPC_macros

%if "%{compiler_family}" != "intel"
BuildRequires: scalapack-%{compiler_family}-%{mpi_family}%{PROJ_DELIM}
Requires:      scalapack-%{compiler_family}-%{mpi_family}%{PROJ_DELIM}
%endif

# Base package name
%define pname petsc

Name:           %{pname}-%{compiler_family}-%{mpi_family}%{PROJ_DELIM}
Summary:        Portable Extensible Toolkit for Scientific Computation
License:        2-clause BSD
Group:          %{PROJ_NAME}/parallel-libs
Version:        3.25.5
Release:        1%{?dist}
Source0:        https://web.cels.anl.gov/projects/petsc/download/release-snapshots/petsc-%{version}.tar.gz
Url:            http://www.mcs.anl.gov/petsc/
Requires:       lmod%{PROJ_DELIM} >= 7.6.1
BuildRequires:  phdf5-%{compiler_family}-%{mpi_family}%{PROJ_DELIM}
Requires:       phdf5-%{compiler_family}-%{mpi_family}%{PROJ_DELIM}
BuildRequires:  hypre-%{compiler_family}-%{mpi_family}%{PROJ_DELIM}
Requires:       hypre-%{compiler_family}-%{mpi_family}%{PROJ_DELIM}
BuildRequires:  python3-devel
BuildRequires:  valgrind-devel
BuildRequires:  make
BuildRequires:  xz
BuildRequires:  zlib-devel
%if 0%{?rhel} || 0%{?openEuler}
BuildRequires:  openssh-clients
BuildRequires:  glibc-langpack-en
%else
BuildRequires:  openssh
%endif

#!BuildIgnore: post-build-checks

# Default library install path
%define install_path %{OHPC_LIBS}/%{compiler_family}/%{mpi_family}/%{pname}%{OHPC_CUSTOM_PKG_DELIM}/%version

%description
PETSc is a suite of data structures and routines for the scalable
(parallel) solution of scientific applications modeled by partial
differential equations.

%prep
%setup -q -n %{pname}-%{version}

%build
# OpenHPC compiler/mpi designation
%ohpc_setup_compiler

module load phdf5
module load hypre

%if "%{compiler_family}" == "arm1"
module load scalapack
%endif

# Enable scalapack and openblas linkage for blas/lapack with gnu and other (e.g. llvm) builds
%if "%{compiler_family}" != "intel" && "%{compiler_family}" != "arm1"
module load scalapack openblas
%endif

# PETSc build system doesn't honor canonical CFLAGS,CXXFLAGS, etc
# directly. Place them in OPTFLAG variants instead.
COPTFLAGS="${CFLAGS}"
CXXOPTFLAGS="${CXXFLAGS}"
FOPTFLAGS="${FCFLAGS}"

# Unset environment variables that conflict with PETSc configure command-line args
# PETSc warns when these are set both as env vars and on command line
unset CFLAGS CXXFLAGS FCFLAGS FFLAGS
unset CC CXX FC F77 F90
unset LDFLAGS MPI_DIR

# Set compilers - use Intel MPI wrappers for impi+intel combination
%if "%{mpi_family}" == "impi" && "%{compiler_family}" == "intel"
PETSC_CC=mpiicc
PETSC_CXX=mpiicpc
PETSC_FC=mpiifort
%else
PETSC_CC=mpicc
PETSC_CXX=mpicxx
PETSC_FC=mpif90
%endif

# Wrap with ccache if enabled
%if "%{?OHPC_USE_CCACHE}" == "yes"
PETSC_CC="ccache ${PETSC_CC}"
PETSC_CXX="ccache ${PETSC_CXX}"
%endif

# gnu-impi finds include/4.8.0/mpi.mod first, unless told not to.
%{__python3} ./config/configure.py \
        --prefix=%{install_path} \
        --with-cc="${PETSC_CC}" \
        --with-cxx="${PETSC_CXX}" \
        --with-fc="${PETSC_FC}" \
        --with-f77="${PETSC_FC}" \
%if "%{compiler_family}" == "intel"
        COPTFLAGS="${COPTFLAGS}" \
        CXXOPTFLAGS="${CXXOPTFLAGS}" \
        FOPTFLAGS="${FOPTFLAGS}" \
        FFLAGS+="-fPIC -fpscomp logicals" \
        CFLAGS+="-fPIC -DPIC" \
        CXXFLAGS+="-fPIC -DPIC" \
        --with-blas-lapack-dir=$MKLROOT/lib/intel64 \
%else
        COPTFLAGS="${COPTFLAGS}" \
        CXXOPTFLAGS="${CXXOPTFLAGS}" \
        FOPTFLAGS="${FOPTFLAGS}" \
        FFLAGS+="-fPIC" \
        CFLAGS+="-fPIC -DPIC" \
        CXXFLAGS+="-fPIC -DPIC" \
        --with-scalapack-dir=$SCALAPACK_DIR \
%if "%{compiler_family}" == "arm1"
        --with-blas-lapack-lib=$ARMPL_LIBRARIES/libarmpl.so \
%else
        --with-blas-lapack-lib=$OPENBLAS_LIB/libopenblas.so \
%endif
%endif
%if "%{mpi_family}" == "impi" && "%{compiler_family}" == "gnu"
        FFLAGS+="-I$I_MPI_ROOT/include64/gfortran/4.9.0/" \
%endif
%if 0%{?OHPC_BUILD}
        --with-make-np=3 \
%endif
        --with-c-support \
        --with-fortran-interfaces=1 \
        --with-debugging=no \
        --with-shared-libraries \
        --with-mpi=1 \
        --with-batch=0 \
        --with-hdf5=1 \
        --with-hdf5-lib=$HDF5_LIB/libhdf5.so \
        --with-hdf5-include=$HDF5_INC \
        --with-hypre=1 \
        --with-hypre-dir=$HYPRE_DIR || cat configure.log

make %{?_smp_mflags}

%install

make install DESTDIR=$RPM_BUILD_ROOT

# Upstream ships these files executable despite having no shebang,
# which makes rpmbuild's brp-mangle-shebangs warn while stripping the
# bit itself anyway. Do it ourselves first so it has nothing left to
# warn about.
for file in \
	share/petsc/matlab/UFgetPetscMat.m \
	share/petsc/matlab/laplacianlicense.txt \
	share/petsc/matlab/PetscBinaryRead.m \
	share/petsc/matlab/PetscBinaryWrite.m \
	share/petsc/matlab/@PetscOpenFile/write.m \
	share/petsc/matlab/@PetscOpenFile/PetscOpenFile.m \
	share/petsc/matlab/@PetscOpenFile/close.m \
	share/petsc/matlab/@PetscOpenFile/read.m \
	share/petsc/matlab/PetscBagRead.m \
	share/petsc/matlab/@PetscOpenSocket/write.m \
	share/petsc/matlab/@PetscOpenSocket/PetscOpenSocket.m \
	share/petsc/matlab/@PetscOpenSocket/close.m \
	share/petsc/matlab/@PetscOpenSocket/read.m \
	share/petsc/matlab/generatePetscTestFiles.m \
	share/petsc/matlab/laplacian.m \
	share/petsc/matlab/PetscReadBinaryMatlab.m \
	share/petsc/matlab/launch.m \
	share/petsc/examples/src/sys/tests/ex55.py \
	share/petsc/examples/config/example_template.py \
	share/petsc/datafiles/meshes/nozzle.egads \
	share/petsc/datafiles/meshes/nozzle.igs \
	share/petsc/datafiles/meshes/nozzle.stp \
	lib/petsc/bin/petsc_conf.py \
	lib/petsc/bin/PetscBinaryIO.py \
	lib/petsc/bin/PetscBinaryIO_tests.py; do
		chmod -x $RPM_BUILD_ROOT%{install_path}/$file
done

cd %{buildroot}%{install_path}
for file in \
	lib/petsc/bin/petsc_gen_xdmf.py \
	lib/petsc/bin/PetscBinaryIOTrajectory.py \
	lib/petsc/bin/petscnagfor \
	lib/petsc/bin/taucc.py \
	lib/petsc/bin/petscnagupgrade.py \
	lib/petsc/bin/saws/SAWs.py \
	share/petsc/examples/config/testparse.py \
	share/petsc/examples/config/gmakegen.py \
	share/petsc/examples/config/gmakegentest.py \
	share/petsc/examples/config/report_tests.py; do
		sed -e "s,/env python.*,/python3,g" -i $file
done

# remove stock module file
rm -rf %{buildroot}%{install_path}/lib/modules

# OpenHPC module file
%{__mkdir} -p %{buildroot}%{OHPC_MODULEDEPS}/%{compiler_family}-%{mpi_family}/%{pname}
%{__cat} << EOF > %{buildroot}/%{OHPC_MODULEDEPS}/%{compiler_family}-%{mpi_family}/%{pname}/%{version}%{OHPC_CUSTOM_PKG_DELIM}
#%Module1.0#####################################################################

proc ModulesHelp { } {

puts stderr " "
puts stderr "This module loads the PETSc library built with the %{compiler_family} compiler"
puts stderr "toolchain and the %{mpi_family} MPI stack."
puts stderr " "

puts stderr "\nVersion %{version}\n"

}
module-whatis "Name: %{pname} built with %{compiler_family} compiler and %{mpi_family} MPI"
module-whatis "Version: %{version}"
module-whatis "Category: runtime library"
module-whatis "Description: %{summary}"
module-whatis "%{url}"

set     version                     %{version}

# Require phdf5 and hypre (and scalapack for compiler families other than intel)
depends-on phdf5
depends-on hypre
%if "%{compiler_family}" != "intel"
depends-on scalapack
%endif

prepend-path    PATH                %{install_path}/bin
prepend-path    INCLUDE             %{install_path}/include
prepend-path    LD_LIBRARY_PATH     %{install_path}/lib

setenv          %{PNAME}_DIR        %{install_path}
setenv          %{PNAME}_BIN        %{install_path}/bin
setenv          %{PNAME}_INC        %{install_path}/include
setenv          %{PNAME}_LIB        %{install_path}/lib

EOF

%{__cat} << EOF > %{buildroot}/%{OHPC_MODULEDEPS}/%{compiler_family}-%{mpi_family}/%{pname}/.version.%{version}%{OHPC_CUSTOM_PKG_DELIM}
#%Module1.0#####################################################################
##
## version file for %{pname}-%{version}
##
set     ModulesVersion      "%{version}%{OHPC_CUSTOM_PKG_DELIM}"
EOF

%{__mkdir} -p $RPM_BUILD_ROOT/%{_docdir}

%files
%{OHPC_PUB}
%doc CONTRIBUTING LICENSE