%define mpi_family impi

%define compiler_family intel

#----------------------------------------------------------------------------bh-

# This RPM .spec file is part of the OpenHPC project.

#

# It may have been modified from the default version supplied by the underlying

# release package (if available) in order to apply patches, perform customized

# build/install configurations, and supply additional files to support

# desired integration conventions.

#

#----------------------------------------------------------------------------eh-

​

# Build that is dependent on compiler/mpi toolchains

%define ohpc_compiler_dependent 1

%define ohpc_mpi_dependent 1

%include %{_sourcedir}/OHPC_macros

​

# Base package name

%define pname hdf5

​

Summary:   A general purpose library and file format for storing scientific data

Name:      p%{pname}-%{compiler_family}-%{mpi_family}%{PROJ_DELIM}

Version:   1.14.0

Release:   1%{?dist}

License:   Hierarchical Data Format (HDF) Software Library and Utilities License

Group:     %{PROJ_NAME}/io-libs

URL:       http://www.hdfgroup.org/HDF5

​

Source0:   https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.14/%{pname}-%{version}/src/%{pname}-%{version}.tar.bz2

​

BuildRequires: zlib-devel make

BuildRequires: perl(File::Compare)

BuildRequires: perl(File::Copy)

​

%if "%{compiler_family}" == "intel"

BuildRequires: libtool%{PROJ_DELIM}

%endif

​

#!BuildIgnore: post-build-checks rpmlint-Factory

​

# Default library install path

%define install_path %{OHPC_LIBS}/%{compiler_family}/%{mpi_family}/%{pname}/%version

​

%description

HDF5 is a general purpose library and file format for storing scientific data.

HDF5 can store two primary objects: datasets and groups. A dataset is

essentially a multidimensional array of data elements, and a group is a

structure for organizing objects in an HDF5 file. Using these two basic

objects, one can create and store almost any kind of scientific data

structure, such as images, arrays of vectors, and structured and unstructured

grids. You can also mix and match them in HDF5 files according to your needs.

​

%prep

%setup -q -n %{pname}-%{version}

​

%build

# override with newer config.guess for aarch64

%ifarch aarch64 || ppc64le

%if 0%{?rhel} >= 9

cp /usr/lib/rpm/redhat/config.guess bin

%else

cp /usr/lib/rpm/config.guess bin

%endif

%endif

​

# OpenHPC compiler/mpi designation

%ohpc_setup_compiler

​

export CC=mpicc

export CXX=mpicxx

export F77=mpif77

export FC=mpif90

export MPICC=mpicc

export MPIFC=mpifc

export MPICXX=mpicxx

​

%if "%{mpi_family}" == "impi" && "%{compiler_family}" == "gnu14"

# This is not really the perfect solution, but impi does not have

# the necessary files for gfortran 12. It seems to work with

# the files from gfortran 11.1.0.

export FCFLAGS="-I $MPI_DIR/include/mpi/gfortran/11.1.0 $FCFLAGS"

export FCFLAGS="$FCFLAGS -Wno-array-temporaries"

export CFLAGS="$CFLAGS -Wno-redundant-decls"

%endif

​

%if "%{compiler_family}" == "arm1"

# For some reason the flag '-lmpi"' has a double quote at the end.

# This tries to adapt the configure script to remove double quotes

# from the linker options.

%{__sed} -i -e 's,^  ac_cv_fc_libs="\$ac_cv_fc_libs $ac_arg,  ac_cv_fc_libs="\$ac_cv_fc_libs \$(echo \$ac_arg | sed "s/\\"//g"),g' configure

%endif

​

%if "%{compiler_family}" == "intel"

export PATH=%{OHPC_UTILS}/autotools/bin:${PATH}

autoreconf -if

sed -e 's/NO_SYMBOLS_CFLAGS="-Wl,-s"/NO_SYMBOLS_CFLAGS=/g' -i config/intel-flags

sed -e 's/NO_SYMBOLS_CFLAGS="-Wl,-s"/NO_SYMBOLS_CFLAGS=/g' -i config/intel-cxxflags

# delete special flags no longer available

echo "" > config/intel-warnings/18

sed '/-Wp64/d' -i config/intel-warnings/15

%endif

​

./configure --prefix=%{install_path} \

        --enable-fortran         \

            --enable-static=no       \

            --enable-parallel        \

        --enable-shared         || { cat config.log && exit 1; }

​

%if "%{compiler_family}" == "llvm" || "%{compiler_family}" == "arm1"

%{__sed} -i -e 's#wl=""#wl="-Wl,"#g' libtool

%{__sed} -i -e 's#pic_flag=""#pic_flag=" -fPIC -DPIC"#g' libtool

%endif

​

make %{?_smp_mflags}

​

%install

​

# OpenHPC compiler designation

%ohpc_setup_compiler

​

export NO_BRP_CHECK_RPATH=true

​

make %{?_smp_mflags} DESTDIR=$RPM_BUILD_ROOT install

​

# Remove static libraries

find "%buildroot" -type f -name "*.la" | xargs rm -f

​

# OpenHPC module file

%{__mkdir_p} %{buildroot}%{OHPC_MODULEDEPS}/%{compiler_family}-%{mpi_family}/p%{pname}

%{__cat} << EOF > %{buildroot}/%{OHPC_MODULEDEPS}/%{compiler_family}-%{mpi_family}/p%{pname}/%{version}

#%Module1.0#####################################################################

​

proc ModulesHelp { } {

​

puts stderr " "

puts stderr "This module loads the parallel %{pname} library built with the %{compiler_family} compiler"

puts stderr "toolchain and the %{mpi_family} MPI stack."

puts stderr "\nVersion %{version}\n"

​

}

module-whatis "Name: %{pname} built with %{compiler_family} compiler and %{mpi_family} MPI"

module-whatis "Version: %{version}"

module-whatis "Category: runtime library"

module-whatis "Description: %{summary}"

module-whatis "%{url}"

​

set     version             %{version}

​

prepend-path    PATH                %{install_path}/bin

prepend-path    INCLUDE             %{install_path}/include

prepend-path    LD_LIBRARY_PATH     %{install_path}/lib

​

setenv          %{PNAME}_DIR        %{install_path}

setenv          %{PNAME}_LIB        %{install_path}/lib

setenv          %{PNAME}_BIN        %{install_path}/bin

setenv          %{PNAME}_INC        %{install_path}/include

​

family "hdf5"

EOF

​

%{__cat} << EOF > %{buildroot}/%{OHPC_MODULEDEPS}/%{compiler_family}-%{mpi_family}/p%{pname}/.version.%{version}

#%Module1.0#####################################################################

##

## version file for %{pname}-%{version}

##

set     ModulesVersion      "%{version}"

EOF

​

%{__mkdir_p} ${RPM_BUILD_ROOT}/%{_docdir}

​

%files

%{OHPC_PUB}

%doc COPYING

%doc README.md

​